Quenouille, Brice, Bermingham, Eldredge, and Planes, Serge. 2004. "Molecular Systematics of the Damselfishes (Teleostei: Pomacentridae): Bayesian Phylogenetic Analyses of Mitochondrial and Nuclear DNA ...
The phylogenetic bootstrap is the most commonly used method for assessing statistical confidence in estimated phylogenies by non-Bayesian methods such as maximum parsimony and maximum likelihood (ML).
The paper: M.C. Brandley et al., "Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards," Systematic Biol, 54:373-90, 2005. (Cited in 73 papers) The ...
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